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Season 1 Sep. 10, 1993
- Episode 1: Pilot
- Episode 2: Deep Throat
- Episode 3: Squeeze
- Episode 4: Conduit
- Episode 5: The Jersey Devil
- Episode 6: Shadows
- Episode 7: Ghost in the Machine
- Episode 8: Ice
- Episode 9: Space
- Episode 10: Fallen Angel
- Episode 11: Eve
- Episode 12: Fire
- Episode 13: Beyond the Sea
- Episode 14: Gender Bender
- Episode 15: Lazarus
- Episode 16: Young at Heart
- Episode 17: E.B.E.
- Episode 18: Miracle Man
- Episode 19: Shapes
- Episode 20: Darkness Falls
- Episode 21: Tooms
- Episode 22: Born Again
- Episode 23: Roland
- Episode 24: The Erlenmeyer Flask
Season 2 Sep. 16, 1994
- Episode 1: Little Green Men
- Episode 2: The Host
- Episode 3: Blood
- Episode 4: Sleepless
- Episode 5: Duane Barry
- Episode 6: Ascension
- Episode 7: 3
- Episode 8: One Breath
- Episode 9: Firewalker
- Episode 10: Red Museum
- Episode 11: Excelsis Dei
- Episode 12: Aubrey
- Episode 13: Irresistible
- Episode 14: Die Hand Die Verletzt
- Episode 15: Fresh Bones
- Episode 16: Colony
- Episode 17: End Game
- Episode 18: Fearful Symmetry
- Episode 19: Dod Kalm
- Episode 20: Humbug
- Episode 21: The Calusari
- Episode 22: F. Emasculata
- Episode 23: Soft Light
- Episode 24: Our Town
- Episode 25: Anasazi
Season 3 Sep. 22, 1995
- Episode 1: The Blessing Way
- Episode 2: Paper Clip
- Episode 3: D.P.O.
- Episode 4: Clyde Bruckman's Final Repose
- Episode 5: The List
- Episode 6: 2Shy
- Episode 7: The Walk
- Episode 8: Oubliette
- Episode 9: Nisei
- Episode 10: 731
- Episode 11: Revelations
- Episode 12: War of the Coprophages
- Episode 13: Syzygy
- Episode 14: Grotesque
- Episode 15: Piper Maru
- Episode 16: Apocrypha
- Episode 17: Pusher
- Episode 18: Teso Dos Bichos
- Episode 19: Hell Money
- Episode 20: Jose Chung's "From Outer Space"
- Episode 21: Avatar
- Episode 22: Quagmire
- Episode 23: Wetwired
- Episode 24: Talitha Cumi
Season 4 Oct. 04, 1996
- Episode 1: Herrenvolk
- Episode 2: Home
- Episode 3: Teliko
- Episode 4: Unruhe
- Episode 5: The Field Where I Died
- Episode 6: Sanguinarium
- Episode 7: Musings of a Cigarette Smoking Man
- Episode 8: Tunguska
- Episode 9: Terma
- Episode 10: Paper Hearts
- Episode 11: El Mundo Gira
- Episode 12: Leonard Betts
- Episode 13: Never Again
- Episode 14: Memento Mori
- Episode 15: Kaddish
- Episode 16: Unrequited
- Episode 17: Tempus Fugit
- Episode 18: Max
- Episode 19: Synchrony
- Episode 20: Small Potatoes
- Episode 21: Zero Sum
- Episode 22: Elegy
- Episode 23: Demons
- Episode 24: Gethsemane
Season 5 Nov. 02, 1997
- Episode 1: Redux
- Episode 2: Redux II
- Episode 3: Unusual Suspects
- Episode 4: Detour
- Episode 5: The Post-Modern Prometheus
- Episode 6: Christmas Carol
- Episode 7: Emily
- Episode 8: Kitsunegari
- Episode 9: Schizogeny
- Episode 10: Chinga
- Episode 11: Kill Switch
- Episode 12: Bad Blood
- Episode 13: Patient X
- Episode 14: The Red and the Black
- Episode 15: Travelers
- Episode 16: Mind’s Eye
- Episode 17: All Souls
- Episode 18: The Pine Bluff Variant
- Episode 19: Folie à Deux
- Episode 20: The End
Season 6 Nov. 08, 1998
- Episode 1: The Beginning
- Episode 2: Drive
- Episode 3: Triangle
- Episode 4: Dreamland
- Episode 5: Dreamland II
- Episode 6: How the Ghosts Stole Christmas
- Episode 7: Terms of Endearment
- Episode 8: The Rain King
- Episode 9: S.R. 819
- Episode 10: Tithonus
- Episode 11: Two Fathers
- Episode 12: One Son
- Episode 13: Agua Mala
- Episode 14: Monday
- Episode 15: Arcadia
- Episode 16: Alpha
- Episode 17: Trevor
- Episode 18: Milagro
- Episode 19: The Unnatural
- Episode 20: Three of a Kind
- Episode 21: Field Trip
- Episode 22: Biogenesis
Season 7 Nov. 07, 1999
- Episode 1: The Sixth Extinction
- Episode 2: The Sixth Extinction II: Amor Fati
- Episode 3: Hungry
- Episode 4: Millennium
- Episode 5: Rush
- Episode 6: The Goldberg Variation
- Episode 7: Orison
- Episode 8: The Amazing Maleeni
- Episode 9: Signs & Wonders
- Episode 10: Sein Und Zeit
- Episode 11: Closure
- Episode 12: X-Cops
- Episode 13: First Person Shooter
- Episode 14: Theef
- Episode 15: En Ami
- Episode 16: Chimera
- Episode 17: All things
- Episode 18: Brand X
- Episode 19: Hollywood A.D.
- Episode 20: Fight Club
- Episode 21: Je Souhaite
- Episode 22: Requiem
Season 8 Nov. 05, 2000
- Episode 1: Within
- Episode 2: Without
- Episode 3: Patience
- Episode 4: Roadrunners
- Episode 5: Invocation
- Episode 6: Redrum
- Episode 7: Via Negativa
- Episode 8: Surekill
- Episode 9: Salvage
- Episode 10: Badlaa
- Episode 11: The Gift
- Episode 12: Medusa
- Episode 13: Per Manum
- Episode 14: This Is Not Happening
- Episode 15: DeadAlive
- Episode 16: Three Words
- Episode 17: Empedocles
- Episode 18: Vienen
- Episode 19: Alone
- Episode 20: Essence
- Episode 21: Existence
Season 9 Nov. 11, 2001
- Episode 1: Nothing Important Happened Today
- Episode 2: Nothing Important Happened Today II
- Episode 3: Dæmonicus
- Episode 4: 4-D
- Episode 5: Lord of the Flies
- Episode 6: Trust No 1
- Episode 7: John Doe
- Episode 8: Hellbound
- Episode 9: Provenance
- Episode 10: Providence
- Episode 11: Audrey Pauley
- Episode 12: Underneath
- Episode 13: Improbable
- Episode 14: Scary Monsters
- Episode 15: Jump the Shark
- Episode 16: William
- Episode 17: Release
- Episode 18: Sunshine Days
- Episode 19: The Truth
Season 10 Jan. 24, 2016
The X-Files Season 9 Episode 1
Agent Doggett investigates the death of an EPA official after his car is forced off a bridge by a woman he picked up. He asks for assistance on the case from Scully, who has returned to her teaching position at the FBI Academy in Quantico.